SV analysis and Report page overview
This pipeline assess structural variation throughout the genome using the BAM file(s) output by our Alignment/QC workflow, and provides an interactive visualization to browse potential SVs.
-an interactive circos plot for visualizing SV calls
-raw, long-range raw SVs detected by manta in compressed VCF format
-raw, short variants detected by manta in compressed VCF format
-raw, variants detected by manta in diploid mode, in compressed VCF format
-raw, variants detected by manta in somatic mode, in compressed VCF format