Results

RNA-Seq Alignment and QC
Alignment workflow and Report page overview The alignment of each individual sample starts with fastq data, performs QC, aligns reads to the genome using ...
Sat, 2 Sep, 2023 at 5:46 AM
RNA-Seq Differential Expression analysis
Differential expression analysis and Report page overview Differential expression analysis using DESeq2 starts with the gene count matrix files produced by...
Sat, 2 Sep, 2023 at 6:06 AM
ChIP-Seq Alignment and QC
Alignment workflow and Report page overview The alignment of each individual sample starts with fastq data, performs QC, aligns reads to the genome using ...
Fri, 1 Sep, 2023 at 9:20 PM
ChIP-Seq macs2 peak analysis
Peak calling workflow and Report page overview ChIP-Seq peak calling using macs2 starts with the de-duplicated BAM file produced by our alignment and QC pi...
Sat, 2 Sep, 2023 at 1:50 PM
ATAC-Seq alignment and QC
Alignment workflow and Report page overview The alignment of each individual sample starts with fastq data, performs QC, aligns reads to the genome using ...
Sat, 2 Sep, 2023 at 2:48 PM
ATAC-Seq macs2 peak analysis
Peak calling workflow and Report page overview ATAC-seq peak calling using macs2 starts with the de-duplicated BAM file produced by our alignment and QC pi...
Sat, 2 Sep, 2023 at 6:41 AM
DNA-Seq/WGS/WES Alignment and QC
Alignment workflow and Report page overview The alignment of each individual sample starts with fastq data, performs QC, aligns reads to the genome using ...
Sat, 2 Sep, 2023 at 5:37 AM
Germline variant calling (GATK4)
Variant calling workflow and Report page overview Germline variant calling starts with the BAM file produced by our Alignment/QC pipeline, variants are cal...
Sat, 2 Sep, 2023 at 2:12 PM
Somatic Variant calling (GATK4-Mutect2
Variant calling workflow and Report page overview Somatic variant calling starts with the BAM files produced by our Alignment/QC pipeline, variants are cal...
Sat, 2 Sep, 2023 at 2:12 PM
Copy Number Variation (CNV) analysis (GATK4)
CNV analysis and Report page overview This pipeline assess copy number variation throughout the genome using the BAM file(s) output by our Alignment/QC wor...
Sat, 2 Sep, 2023 at 2:31 PM