PEAKS TABLE

Peaks called in your data

Chrom, Start, End, Length - genomic coordinates and size of the peak

Pileup - raw count signal at the peak summit

Pval - peak significance values ( -10 * log10 )

Qval - FDR-corrected peak significance values ( -10 * log10 )

Fold - calculation of signal relative to background

Annotation - location of peak in relation to the nearest (or overlapping) gene and it's features (ie. TSS, exons)

Accession - gene ID of nearest gene(s)

Symbol - gene symbol/name of nearest gene(s)




FRiP TABLE

Fraction of Reads in Peaks (FRiP) quantifies the enrichment of biological signal (reads) in the detected regions of interest (peaks)




ENRICHMENT TABLE

Enrichment analysis of peaks called in your dataset and a wide array of genomic databases


Database - source of gene sets (or genomic regions/elements) that peaks are tested against

    GO Biological Process - (Gene Ontology) gene sets associated with specific biological processes

    GO Molecular Function - (Gene Ontology) gene sets associated with specific molecular functions

    GO Cellular Component - (Gene Ontology) gene sets associated with specific cellular components

    WikiPathways - gene sets associated with various cellular pathways and functions

    Chromsome - distinct regions of chromosomes identified based on banding patterns

    EMBL-EBI-Pfam - protein family database identified by multi-sequence alignment (now in InterPro)

    Gene3D - protein domain database, classification at the level of superfamily

    Interactions - gene sets known to interact with a specific protein, available through the NIH

    InterPro - database of protein families and their function

    miRNA - miRNA targets database from mirDB

    MSIGDB - gene sets associated with a variety of molecular and cellular functions

    PRINTS - protein family "fingerprints" database based on domain conservation (now part of InterPro)

    Prosite - database of protein families, domains, and functional sites

    SMART - protein domain database


TermID - a unique identifier of this gene set from its database

Term - name of the gene set

Enrichment logP - log-scaled significance of enrichment (p-value) for the gene set

Genes in Term - total number of genes in this gene set

Target Genes in Term - number of genes shared between your dataset and this gene set

Total Target Genes - total number of genes in your dataset

Total Genes in Database - Total number of genes in the gene set database

Fraction of Targets in Term - genes shared between your dataset and this gene set as a percent of the total number of genes in your dataset

Targets as Fraction of Genes - genes shared between your dataset and this gene set as a percent of the number of genes in the gene set




MOTIFS TABLE

Enriched motifs and transcription factors known to bind them