Single Cell RNA-Seq FAQ (4)

What tools do you use in Basepair's single cell pipeline?

Modified on Mon, 26 Oct, 2020 at 10:54 AM
Can I upload two samples of single cell RNA-seq data (treatment and control) and compare them?

Modified on Mon, 26 Oct, 2020 at 10:57 AM
How do you account for technical variability? Does the program fit for mean variance trend, test for non zero biological variability, or deconvolution based normalization?

Modified on Mon, 26 Oct, 2020 at 11:01 AM
Do you check the relationship between nUMI vs nGenes plot? Do you have a specific threshold in this graph?

Modified on Mon, 26 Oct, 2020 at 11:05 AM