Creating a Workflow

Overview
Basepair allows users to create their own workflow using a very systematic system defined by YAML text files. The YAML format is support by all major prog...
Fri, 30 Jun, 2017 at 11:55 AM
Define Modules
Module refers to a single tool or a group of tools that runs as a single unit. Here are some examples of simple and complex modules: a module may have a ...
Fri, 30 Jun, 2017 at 11:58 AM
Define Workflow
A Basepair workflow is a collection of modules that run together. A workflow may have a single module (e.g., count the number of lines in a fastq file) or t...
Fri, 30 Jun, 2017 at 12:09 PM
Test
Basepair provides testing frameworks for two purposes: Technical testing: testing the structure of modules and workflows to check if the parameters are p...
Fri, 30 Jun, 2017 at 12:10 PM